API application program interface
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This set of APIs has been developed to provide users with a practical and efficient method for accessing desired information.
| parameter | description | example |
|---|---|---|
| &database= | *essential parameter All databases including ac4CDB_NGS_High_Resolution, ac4CDB_NGS_acRIP-seq, ac4CDB_Direct_RNA_Sequencing and ac4CDiseaseDB. |
curl 'http://www.rnamd.org/ac4cportal/api.php?database=ac4CDiseaseDB&species=human' > ac4cportal_human_ac4CDiseaseDB.txt |
| &species= | *essential parameter | curl 'http://www.rnamd.org/ac4cportal/api.php?database=ac4CDiseaseDB&species=human' > ac4cportal_human_ac4CDiseaseDB.txt |
| &gene_region= | filters by the Gene Region, only for ac4CDB [3' UTR, 5' UTR, Exon, Intron, Downstream, Distal] excluding HIV of ac4CDB_NGS_acRIP-seq | curl 'http://www.rnamd.org/ac4cportal/api.php?database=ac4CDB_NGS_High_Resolution&species=human&gene_region=Exon' > ac4cportal_human_ac4CDB.txt |
| &cell_line= | filters by the Tissue/Cell Line, only for ac4CDB_NGS_acRIP-seq and ac4CDB_Direct_RNA_Sequencing, excluding Celegans and Zebrafish of ac4CDB_NGS_acRIP-seq | curl 'http://www.rnamd.org/ac4cportal/api.php?database=ac4CDB_NGS_High_Resolution&species=human&cell_line=DLD1' > ac4cportal_human_ac4CDB.txt |
| &ID= | filters by the ID The formats are species_NGS_Base_number, species_region_number and species_ONT_number. |
curl 'http://www.rnamd.org/ac4cportal/api.php?database=ac4CDB_NGS_High_Resolution&species=human&ID=HomoSapiens_NGS_Base_1' > ac4cportal_human_ac4CDB.txt |
| &condition= | filters by the condition, only for ac4CDB_Direct_RNA_Sequencing | curl 'http://www.rnamd.org/ac4cportal/api.php?ac4CDB_Direct_RNA_Sequencing&species=HomoSapiens&condition=cytokines' > ac4cportal_human_ac4CDB.txt |
| &ac4C_status= | filters by the ac4C Status, only for ac4CDiseaseDB [loss; gain] | curl 'http://www.rnamd.org/ac4cportal/api.php?database=ac4CDiseaseDB&species=human&ac4C_status=gain' > ac4cportal_human_ac4CDiseaseDB.txt |
| &confidence_level= | filters by the confidence level, only for ac4CDiseaseDB [low, medium, high] | curl 'http://www.rnamd.org/ac4cportal/api.php?database=ac4CDiseaseDB&species=human&confidence_level=high' > ac4cportal_human_ac4CDiseaseDB.txt |
Examples: Access the results by clicking the link.
- To retrieve all rat-related information in ac4CDiseaseDB where the ac4C status is "gain variant" and the confidence level is "low," use the following command:
curl 'http://www.rnamd.org/ac4cportal/api.php?database=ac4CDiseaseDB&species=rat&ac4C_status=gain&confidence_level=low' > ac4cportal_rat_ac4CDiseaseDB.txt - To retrieve all human-related information in ac4CDB_NGS_acRIP-seq where the gene region is "Exon" and the cell line is "HL-60," use the following command:
curl 'http://www.rnamd.org/ac4cportal/api.php?database=ac4CDB_NGS_acRIP-seq&species=human&gene_region=Exon&cell_line=HeLa' > ac4cportal_human_ac4CDB.txt
Download :
- To save data as JSON format, use right-click or Ctrl+S on the data page.
- For direct download via terminal, use the curl command as shown above.
- We support displaying and downloading up to 10,000 data entries. For larger datasets, please use the Download option.